Interactive, exploratory visual analysis of genomic data
Interactive, exploratory visual analysis of metagenomic data
Segment-based RNA-seq analysis
Analysis tools for large high-throughput metagenomics sequencing projects
Methods for analysis of DNA methylation from second-generation sequencing and microarrays.
General methods for quality assessment of second-generation sequencing data.
Classifying cancer based on heterogeneity.
Secure computation for genomic biomarker analysis
A novel method for incorporating arbitrary pedigree data into smoothing spline ANOVA (SS-ANOVA) models.
A novel method for estimating tree-structured covariance matrices directly from observed continuous data.
A broad class of aggregate database queries, called MPF queries, inspired by the literature on probabilistic inference in statistics and machine learning.
Ph.D. dissertation for the Dept. of Computer Sciences, University of Wisconsin-Madison.