Héctor Corrada Bravo bio photo

Héctor Corrada Bravo

Senior Scientist
Research and Early Development
Genentech


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COMING SOON

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Metagenomics

Analysis tools for large high-throughput metagenomics sequencing projects

  • J. Paulson, O.C. Stein, H. Corrada Bravo, M. Pop. (2013). “Robust statistical methods for differential abundance analysis of marker gene microbial survey data”. Nature Methods, epub ahead of print. doi:10.1038/ nmeth.2658. Nature Methods

  • J. Wagner, F. Chelaru, J. Kancherla, JN. Paulson, V. Felix, A. Mahurkar, H. Corrada Bravo. (2018). “Metaviz: interactive statistical and visual analysis of metagenomic data”. Nucleic Acids Research gky136. Nucleic Acids Research

  • N.D. Olson, M.S. Kumar, S. Li, S. Hao, W. Timp, M.L. Salit, O.C. Stine, H. Corrada Bravo. (2020). “A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures.” Metagenomics

  • MS. Kumar, EV. Slud, K. Okrah, SC. Hicks, S. Hannenhalli, H. Corrada Bravo. (2018). “Analysis and correction of compositional bias in sparse sequencing count data”. BMC Genomics 19:799 BMC Genomics

  • JN. Paulson, H. Talukder, H. Corrada Bravo (2017). “Longitudinal differential abundance analysis of microbial marker-gene surveys using smoothing splines”. Biorvix https://doi.org/10.1101/099457

  • metagenomeSeq Bioconductor package

  • metaviz interactive metagenomic visualization

  • metavizr Bioconductor package

  • metagenomeFeatures Bioconductor package

  • Wrench Bioconductor package